BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027G09LP1|AL428785
(606 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig173 501 e-142
>3x_Contig173
Length = 1358
Score = 501 bits (244), Expect = e-142
Identities = 275/297 (92%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 1 cgtcttgataagtttcttttataacgtcctggaaaaattcaacgtctgattgcaaagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 cgtcttgataagtttcttttataacgtcctggaaaaattcaacgtctgattgcaaagcct 1168
Query: 61 tcaaccaccctaaatkccgtagaatgacatttttatmcaactgkaacgaatcgcttawcg 120
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct: 1167 tcaaccaccctaaattccgtagaatgacatttttatccaactgtaacgaatcgcttatcg 1108
Query: 121 gcgatggcaaaggtwtgaraagwtggraccttggctttggggaaaactcgatcwccycat 180
|||||||||||||| ||| ||| ||| |||||||||||||||||||||||||| || |||
Sbjct: 1107 gcgatggcaaaggtttgaaaagttggaaccttggctttggggaaaactcgatctcctcat 1048
Query: 181 tgaakattccamggkcaaatacgtatattgtgcttccaatccttcttgttgcagctttct 240
|||| |||||| || ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1047 tgaatattccacggtcaaatacgtatat--ttcttccaatccttcttgttgcagctttct 990
Query: 241 ggaatcccatcctgcwttcttcaawaycatyccawaaggkaacaatagaagtatgtc 297
||||||||||||||| |||||||| | ||| ||| |||| |||||||||||||||||
Sbjct: 989 ggaatcccatcctgctttcttcaatatcattccataaggtaacaatagaagtatgtc 933
Score = 331 bits (161), Expect = 1e-90
Identities = 239/263 (90%), Gaps = 10/263 (3%)
Strand = Plus / Minus
Query: 344 tttcaaatcgtaagaracyagggaaataaacattagcataattggygtgaaactcactga 403
||||||||| ||||| || ||||||||||||||||| |||||||| ||||||||| ||||
Sbjct: 896 tttcaaatc-taagaaactagggaaataaacattag-ataattggtgtgaaactc-ctga 840
Query: 404 tgtagcgacatatcaacttgcatggcggcawtattaataaaawwatcagattgtaacctt 463
|||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 839 tgtagc-acatatcaacttgcatggcggcattattaataaaattatcagattgtaacctt 781
Query: 464 aagactttggaaagmaataaaggggcaatgtcgayttaawgawgakgaaatgggagggtg 523
|||||||||||||| ||||||||| ||||||||| |||| || || |||||||| |||||
Sbjct: 780 aagactttggaaagaaataaagggacaatgtcgatttaatgatgatgaaatggg-gggtg 722
Query: 524 ctatacgctcacaggattctatatgcatgagctattctttaaatgctgagatatatctaa 583
|| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 721 tta---gctcacaggattctatat-catgag-tattctttaaatgctgagatatatctaa 667
Query: 584 tctggagtactaaagccgtamgc 606
|||||||||||||||||||| ||
Sbjct: 666 tctggagtactaaagccgtaagc 644
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.718 1.35
Gapped
Lambda K H
1.42 0.718 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2392
Number of Sequences: 1807
Number of extensions: 2392
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 606
length of database: 10,358,551
effective HSP length: 16
effective length of query: 590
effective length of database: 10,329,639
effective search space: 6094487010
effective search space used: 6094487010
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.8 bits)
S1: 11 (23.1 bits)
S2: 48 (99.1 bits)